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Statistics program: SPSS's statistics system includes bivariate statistics and cross-tabulation, among the other statistical procedures.

A hap/sample pair of data files that contains the Beagle4 haplotypes in Impute2 format. These haplotypes are utilized as a starting point for the MCMC Utilized in SHAPEIT.

We a short while ago released the following paper which presented an extension in the SHAPEIT design that requires advantage of the section info contained in sequencing reads:

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The first columns gives the internet site ID, the next the Bodily situation, the third the  variety of haploid heterozygotes uncovered and also the fourth the full number of males with genotypes at that site. An illustration of the file gwas.phased.ind.hh:

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